Publications-2019

A pile of files

MacIntyre CR; Das A; Chen X; de Silva C; Doolan C, 2019, 'Evidence of long-distance aerial convection of variola virus and implications for disease control', Viruses, vol. 12, pp. 33 - 33, http://dx.doi.org/10.3390/v12010033

Costantino V; Trent M; MacIntyre CR, 2019, 'Modelling of optimal timing for influenza vaccination as a function of intraseasonal waning of immunity and vaccine coverage', Vaccine, vol. 37, pp. 6768 - 6775, http://dx.doi.org/10.1016/j.vaccine.2019.08.069

Sulaiman FB; Yanti NKS; Lesmanawati DAS; Trent M; MacIntyre CR; Chughtai AA, 2019, 'Language Specific Gaps in Identifying Early Epidemic Signals – A Case Study of the Malay Language', Global Biosecurity, vol. 1, http://dx.doi.org/10.31646/gbio.33

Tan HY; Lai E; Kunasekaran M; Chughtai AA; Trent M; Poulos CJ; MacIntyre CR, 2019, 'Prevalence and predictors of influenza vaccination among residents of long-term care facilities', Vaccine, vol. 37, pp. 6329 - 6335, http://dx.doi.org/10.1016/j.vaccine.2019.09.021

Raj SM; Chughtai AA; Sharma A; Tan TC; MacIntyre CR, 2019, 'Cost-benefit analysis of a national influenza vaccination program in preventing hospitalisation costs in Australian adults aged 50–64 years old', Vaccine, vol. 37, pp. 5979 - 5985, http://dx.doi.org/10.1016/j.vaccine.2019.08.028

MacIntyre CR; Doolan C; De SIlva C, 2019, 'The explosion at Vector: hoping for the best while preparing for the worst', Global Biosecurity, vol. 1, pp. 91 - 91, http://dx.doi.org/10.31646/gbio.41

MacIntyre CR; Shaw PJ; Mackie FE; Boros C; Marshall H; Seale H; Kennedy SE; Moa A; Chughtai AA; Trent M; O'Loughlin EV; Stormon M, 2019, 'Long term follow up of persistence of immunity following quadrivalent Human Papillomavirus (HPV) vaccine in immunocompromised children', Vaccine, vol. 37, pp. 5630 - 5636, http://dx.doi.org/10.1016/j.vaccine.2019.07.07

Aditya Joshi, Ross Sparks, James McHugh, Sarvnaz Karimi, Cecile Paris, C Raina MacIntyre, `Harnessing tweets for early detection of an acute disease event',  Epidemiology, Wolters Kluwer Health, 2019. (Accepted).

Adith Iyer, Aditya Joshi, Sarvnaz Karimi  , Ross Sparks, Cecile Paris. ‘Figurative Usage Detection of Symptom Words to Improve Personal Health Mention Detection’. Proceedings of the 57th Annual Meeting of the Association for Computational Linguistics. July 2019, Florence Italy.

Australian Government Department of Foreign Affairs and Trade. 2019. Indo-Pacific Centre for Health Security State of the Region 2019 Report: Health Security in the Indo-Pacific. Authors of note – Dr Kerri Viney, Dr Meru Sheel. Advisors of note – Prof Martyn Kirk, A/Prof Katie Glass, Dr Sam Colquhoun.Summers, Jennifer, Baker, Michael, Wilson, Nick 2018. New Zealand’s experience of the 1918 -19 Influenza pandemic: A systematic review after 100 years. The New Zealand medical journal. 131.54-69

O’Carroll, P, Kirk, M, Baggett, K, and Herrera, D. 2018. The Global Field Epidemiology Roadmap: A Report of the Meeting held at the Rockefeller Foundation Bellagio Center, June 11-15 2018. The Task Force for Global Health.

Adam, Dillon C.; Scotch, Matthew; MacIntyre, C R. 2019. Phylodynamics of Influenza A/H1N1pdm09 in India Reveals Circulation Patterns and Increased Selection for Clade 6b Residues and Other High Mortality Mutants. Viruses 2019;11(9): 791.   

Offner, Kim; Sitnikova, Elena; Joiner, Keith; MacIntyre, Raina. Towards understanding cybersecurity capability in Australian healthcare organisations: A systematic review of recent trends, threats and mitigation. Intelligence and National Security, 02 Sep 2019. 

Trent, M. J; Zhang, E. J; Chughtai, A. A.; MacIntyre, C. R.  Parental opinions towards the “No Jab, No Pay” policy in Australia. Vaccine 2019; 37(36):5250-5256. 

Bhattacharjee, Shovon; Joshi, Rakesh; Chughtai, Abrar Ahmad; Macintyre, Chandini Raina. Graphene Modified Multifunctional Personal Protective Clothing. Advanced Materials Interfaces, 20 Aug 2019. doi:  10.1002/admi.201900622

Kunasekaran, Mohana Priya; Chen, Xin; Costantino, Valentina; Chughtai, Abrar Ahmad; MacIntyre, Chandini Raina. Evidence for Residual Immunity to Smallpox After Vaccination and Implications for Re-emergence. Mil Med. 01 Aug 2019.  doi: 10.1093/milmed/usz181

Moa, Aye; Muscatello, David; Chughtai, Abrar; Chen, Xin; MacIntyre, C. Raina. Flucast: A Real-Time Tool to Predict Severity of an Influenza Season. JMIR Public Health Surveill. 23 Jul 2019. 5(3):e11780.

Dyda, Amalie; Karki, Surendra; Kong, Marlene; Gidding, Heather F.; Kaldor, John M.; McIntyre, Peter; Banks, Emily; MacIntyre, C. Raina; Liu, Bette.  Influenza vaccination coverage in a population-based cohort of Australian-born Aboriginal and non-Indigenous older adults. Commun Dis Intell (2018), 16 Jul 2019;43. doi: 10.33321/cdi.2019.43.30. 

MacIntyre CR; Ridda I; Trent MJ; McIntyre P, 2019, 'Persistence of immunity to conjugate and polysaccharide pneumococcal vaccines in frail, hospitalised older adults in long-term follow up', Vaccine, http://dx.doi.org/10.1016/j.vaccine.2019.07.005

MacIntyre, C. R.; Ridda, I.; Trent, M. J.; McIntyre, P. Persistence of immunity to conjugate and polysaccharide pneumococcal vaccines in frail, hospitalised older adults in long-term follow up. Vaccine 2019; 37(35): 5016-5024.

MacIntyre CR, Costantino V, Kunasekaran MP. Health system capacity in Sydney, Australia in the event of a biological attack with smallpox. PLoS ONE. 2019;14(6):e0217704-e. 

Chughtai AA, Stelzer-Braid S, Rawlinson W, Pontivivo G, Wang Q, Pan Y, Zhang D, Zhang Y, Li L, MacIntyre CR. Contamination by respiratory viruses on outer surface of medical masks used by hospital healthcare workers. BMC Infect Dis. 2019 Jun 3;19(1):491

Barnes CE, MacIntyre CR. Risk modelling the mortality impact of antimicrobial resistance in secondary pneumococcal pneumonia infections during the 2009 influenza pandemic. Int J Infect Dis. 2019 May 13;85:1-6. doi:  10.1016/j.ijid.2019.05.005.

Padmawati RS, Heywood A, Sitaresmi MN, Atthobari J, MacIntyre CR, Soenarto Y, Seale H. Religious and community leaders' acceptance of rotavirus vaccine introduction in Yogyakarta, Indonesia: a qualitative study. BMC Public Health. 2019 Apr 3;19(1):368. doi: 10.1186/s12889-019-6706-4.

Moa AM, Adam DC, MacIntyre CR. Inter-seasonality of influenza in Australia. Influenza Other Respir Viruses. 2019 Mar 30. doi: 10.1111/irv.12642

Dirmesropian S, Liu B, Wood JG, MacIntyre CR, McIntyre P, Karki S, Jayasinghe S, Newall AT. Pneumonia hospitalisation and case-fatality rates in older Australians with and without risk factors for pneumococcal disease: implications for vaccine policy. Epidemiol Infect. 2019 Jan;147:e118. doi: 10.1017/S0950268818003473.

MacIntyre, C.R., Costantino, V., Mohanty, B., Nand, D., Kunasekaran, M.P. and Heslop, D. Epidemic size, duration and vaccine stockpiling following a large-scale attack with smallpox. Global Biosecurity 2019, 1(1). doi: http://doi.org/10.31646/gbio.13

Heslop, D.J. and MacIntyre, C.R. Germ line genome editing and the emerging struggle for supremacy in the Chemical, Biological and Radiological (CBR) balance of power. Global Biosecurity, 2019; 1(1).

Zhang EJ, Chughtai AA, Heywood AMacIntyre CR. Influence of political and medical leaders on parental perception of vaccination: a cross-sectional survey in Australia.  BMJ Open 9(3): e025866. 01 Mar 2019 

Chen X, Chughtai AA, MacIntyre CR. Recalibration of the Grunow Finke Assessment Tool to improve performance in detecting unnatural epidemics. Risk Analysis. 01 Jan 2019. doi: 10.1111/risa.13255

Armstrong, Joshua; Adam, Dillon; Kunasekaran, Mohana; MacIntyre, Raina; Nand, Devina; Heslop, David. Themes and correlations of participant experience and evaluation of an interactive bioterrorism release exercise – a mixed methods study. Journal of Global Biosecurity; 1 (2), 02 May 2019.

Joshi, Aditya; Karim, Sarvnaz; Sparks, Ross; Paris, Cecilia; MacIntyre, Raina. Survey of Text-based Epidemic Intelligence: A Computational Linguistic Perspective. ACM Computing Surveys. 14 Mar 2019. 

Sparks, R.; Jin, B.; Karimi, S.; Paris, C.; MacIntyre, C. R. Rejoinder. Quality Engineering. 02 Jan 2019; 31 (1):105-107.doi 10.1080/08982112.2018.1547831

Sparks, R.; Jin, B.; Karimi, S.; Paris, C.; MacIntyre, C. R. Real-time monitoring of events applied to syndromic surveillance. Quality Engineering, 02 Jan 2019; 31(1):73-90. doi: 10.1080/08982112.2018.1537443

Jayasundara, D., Hui, B. B., Regan, D. G., Heywood, A. E., MacIntyre, C. R., & Wood, J. G. Modelling the decline and future of hepatitis A transmission in Australia. Journal of viral hepatitis, 2019; 26(1), 199-207.

Adam, D. C., Jonnagaddala, J., Han-Chen, D., Batongbacal, S., Almeida, L., Zhu, J. Z., & MacIntyre, C. R. (2017). ZikaHack 2016:  A digital disease detection competition. In Proceedings of the International Workshop on Digital Disease Detection using Social Media 2017 (DDDSM-2017) (pp. 39-46).

CR MacIntyre, Heslop D, Nand D, Schramm C, Butel M, Rawlinson W, Baker M, Kiedrzynski T, Nelson C, Fotualii L et al. ‘Exercise Mataika’: White paper on response to a smallpox bioterrorism release. Journal of Global Biosecurity. 18 Feb 2019; 1(1)

Hii A, Chughtai AA, Housen T, Saketa S, Kunasekaran MP, Sulaiman F, Yanti NKS, CR MacIntyre. Epidemic Intelligence needs of stakeholders in the Asia-Pacific region. Western Pacific Surveillance and Response Journal, 2018; Dec 9(4).

McLure, A, Furuya Kanamori, L, Clements, A et al 2019, 'Seasonality and community interventions in a mathematical model of Clostridium difficile transmission [IN PRESS]', Journal of Hospital Infection, vol. Online, pp. 1-8pp.

McLure, A, Clements, A, Kirk, M et al 2019, 'Modelling diverse sources of Clostridium difficile in the community: importance of animals, infants and asymptomatic carriers', Epidemiology and Infection, vol. 147, no. 152, pp. 1-9pp.

Toms, L, Braunig, J, Vijayasarathy, S et al 2019, 'Per- and polyfluoroalkyl substances (PFAS) in Australia: Current levels and estimated population reference values for selected compounds', International Journal of Hygiene and Environmental Health, vol. 222, no. 3, pp. 387-394.

Williamson, D, Kirk, M, Sintchenko, V et al 2019, 'The importance of public health genomics for ensuring health security for Australia', Medical Journal of Australia, vol. 210, no. 7, pp. 295-297.

Ingle, D, da Silva, A, Valcanis, M et al 2019, 'Emergence and divergence of major lineages of Shiga-toxin-producing Escherichia coli in Australia', Microbial Genomics, vol. 5.

Parisi, A, Crump, J, Stafford, R et al 2019, 'Increasing incidence of nontyphoidal Salmonella infections in Queensland, Australia, 2007-2016', PLoS Neglected Tropical Diseases, vol. 13, no. 3, pp. 15pp.

McLure, A, Clements, A, Kirk, M et al 2018, 'Modelling diverse sources of Clostridium difficile in the community: importance of animals, infants and asymptomatic carriers [IN PRESS]', Epidemiology and Infection.

Sheel, M, Beard, F, Quinn, H et al 2018, 'Australian vaccine preventable disease epidemiological review series: varicella-zoster virus infections, 1998-2015', Communicable Diseases Intelligence, vol. 42, no. 18.

White, A, Ciampa, N, Chen, Y et al 2018, 'Characteristics of Campylobacter, Salmonella Infections and Acute Gastroenteritis in Older Adults in Australia, Canada, and the United States [IN PRESS]', Clinical Infectious Diseases.

Sheel, M, Collins, J, Kama, M et al 2018, 'Evaluation of the early warning, alert and response system after Cyclone Winston, Fiji, 2016 ', Bulletin of the World Health Organization, vol. 97, no. 3, pp. 169-244.

Clarke, N. E., S. A. R. Doi, K. Wangdi, Y. Chen, A. C. A. Clements, and S. V. Nery. 2019. "Efficacy of anthelminthic drugs and drug combinations against soil-transmitted helminths: A systematic review and network meta-analysis." Clinical Infectious Diseases 68 (1): 96-105.

Gordon, C. A., J. Kurscheid, G. M. Williams, A. C. A. Clements, Y. Li, X. N. Zhou, J. Utzinger, D. P. McManus, and D. J. Gray. 2019. "Asian Schistosomiasis: Current Status and Prospects for Control Leading to Elimination." Trop Med Infect Dis 4 (1)

Yew YY; Castro Delgado R; Heslop DJ; Arcos González P, 2019, 'The yew disaster severity index: A new tool in disaster metrics', Prehospital and Disaster Medicine, vol. 34, pp. 98 - 103, http://dx.doi.org/10.1017/S1049023X18001115

Harrison R; Manias E; Mears S; Heslop D; Hinchcliff R; Hay L, 2019, 'Addressing unwarranted clinical variation: A rapid review of current evidence', Journal of Evaluation in Clinical Practice, vol. 25, pp. 53 - 65, http://dx.doi.org/10.1111/jep.12930

Kim KW; Allen DW; Briese T; Couper JJ; Barry SC; Colman PG; Cotterill AM; Davis EA; Giles LC; Harrison LC; Harris M; Haynes A; Horton JL; Isaacs SR; Jain K; Lipkin WI; Morahan G; Morbey C; Pang IC N; Papenfuss AT; Penno MA S; Sinnott RO; Soldatos G; Thomson RL; Vuillermin PJ; Wentworth JM; Wilkins MR; Rawlinson WD; Craig ME, 2019, 'Distinct gut virome profile of pregnant women with type 1 diabetes in the ENDIA study', Open Forum Infectious Diseases, vol. 6, http://dx.doi.org/10.1093/ofid/ofz025

Walker GJ; Stelzer-Braid S; Shorter C; Honeywill C; Wynn M; Willenborg C; Barnes P; Kang J; Pierse N; Crane J; Howden-Chapman P; Rawlinson WD, 2019, 'Viruses associated with acute respiratory infection in a community-based cohort of healthy New Zealand children.', J Med Virolhttp://dx.doi.org/10.1002/jmv.25493

Parameshwaran, K., Sharmaa,P., Rajendra,S., Stelzer-Braid,S., Xuan, W., Rawlinson W.D. “Circulating human papillomavirus DNA detection in Barrett’s dysplasia and esophageal adenocarcinoma” Diseases of the Esophagus, 2019 Jul 17. pii: doz064. doi: 10.1093/dote/doz064

Karelehto E; Brouwer L; Benschop K; Kok J; Basile K; McMullan B; Rawlinson W; Druce J; Nicholson S; Selvarangan R; Harrison C; Lankachandra K; van Eijk H; Koen G; de Jong M; Pajkrt D; Wolthers KC, 2019, 'Seroepidemiology of parechovirus A3 neutralizing antibodies, Australia, The Netherlands, and United States', Emerging Infectious Diseases, vol. 25, pp. 148 - 152, http://dx.doi.org/10.3201/eid2501.180352

Zheng QY; Huynh KT; van Zuylen WJ; Craig ME; Rawlinson WD, 2019, 'Cytomegalovirus infection in day care centres: A systematic review and meta-analysis of prevalence of infection in children', Reviews in Medical Virology, vol. 29, http://dx.doi.org/10.1002/rmv.2011

Macdonald-Laurs E; Koirala A; Britton PN; Rawlinson W; Hiew CC; Mcrae J; Dale RC; Jones C; Macartney K; McMullan B; Pillai S, 2019, 'CSF neopterin, a useful biomarker in children presenting with influenza associated encephalopathy?', European Journal of Paediatric Neurology, vol. 23, pp. 204 - 213, http://dx.doi.org/10.1016/j.ejpn.2018.09.009

Ammar, S. E., McIntyre, M. I., Swan, T., Kasper, J., Derraik, J. G. B., Baker, M. G., & Hales, S. (2019). Intercepted mosquitoes at New Zealand's ports of entry, 2001 to 2018: Current status and future concerns. Tropical Medicine & Infectious Disease4(3), 101. doi: 10.3390/tropicalmed4030101

Prasad, N., Huang, S., Wood, T., Aminisani, N., McArthur, C., Baker, M. G., … Newbern, C. (2019). Influenza associated outcomes among pregnant, post-partum, and non-pregnant women of reproductive age. Journal of Infectious Diseases219(12), 1893-1903. doi: 10.1093/infdis/jiz035

Viney K, Islam T, Nguyen H, Morishita F, Lonnroth K. The economic burden of tuberculosis for patients in the Western-Pacific Region. Tropical Medicine and Infectious Disease. 2019. 4:94. doi:10.3390/tropicalmed4020094

Utiera M, Viney K, Bissell K, Biribo S, Corbett K, Timeon E, Teriboriki B, Tibwe T. Ill-defined causes of death in the Republic of Kiribati, 2005 to 2014. Hawaii Journal of Medicine and Public Health. 2019. 78(3):103-107.