PUBLICATIONS 2019

A pile of files

Adam, Dillon C.; Scotch, Matthew; MacIntyre, C R. 2019. Phylodynamics of Influenza A/H1N1pdm09 in India Reveals Circulation Patterns and Increased Selection for Clade 6b Residues and Other High Mortality Mutants. Viruses 2019;11(9): 791.   

Offner, Kim; Sitnikova, Elena; Joiner, Keith; MacIntyre, Raina. Towards understanding cybersecurity capability in Australian healthcare organisations: A systematic review of recent trends, threats and mitigation. Intelligence and National Security, 02 Sep 2019. 

Trent, M. J; Zhang, E. J; Chughtai, A. A.; MacIntyre, C. RParental opinions towards the “No Jab, No Pay” policy in Australia. Vaccine 2019; 37(36):5250-5256. 

Bhattacharjee, Shovon; Joshi, Rakesh; Chughtai, Abrar Ahmad; Macintyre, Chandini Raina. Graphene Modified Multifunctional Personal Protective Clothing. Advanced Materials Interfaces, 20 Aug 2019. doi:  10.1002/admi.201900622

Kunasekaran, Mohana Priya; Chen, Xin; Costantino, Valentina; Chughtai, Abrar Ahmad; MacIntyre, Chandini Raina. Evidence for Residual Immunity to Smallpox After Vaccination and Implications for Re-emergence. Mil Med. 01 Aug 2019.  doi: 10.1093/milmed/usz181

Moa, Aye; Muscatello, David; Chughtai, Abrar; Chen, Xin; MacIntyre, C. Raina. Flucast: A Real-Time Tool to Predict Severity of an Influenza Season. JMIR Public Health Surveill. 23 Jul 2019. 5(3):e11780.

Dyda, Amalie; Karki, Surendra; Kong, Marlene; Gidding, Heather F.; Kaldor, John M.; McIntyre, Peter; Banks, Emily; MacIntyre, C. Raina; Liu, Bette.  Influenza vaccination coverage in a population-based cohort of Australian-born Aboriginal and non-Indigenous older adults. Commun Dis Intell (2018), 16 Jul 2019;43. doi: 10.33321/cdi.2019.43.30. 

Chughtai AA; Stelzer-Braid S; Rawlinson W; Pontivivo G; Wang Q; Pan Y; Zhang D; Zhang Y; Li L; MacIntyre CR, 2019, 'Contamination by respiratory viruses on outer surface of medical masks used by hospital healthcare workers', BMC Infectious Diseases, vol. 19, http://dx.doi.org/10.1186/s12879-019-4109-x

MacIntyre CR; Ridda I; Trent MJ; McIntyre P, 2019, 'Persistence of immunity to conjugate and polysaccharide pneumococcal vaccines in frail, hospitalised older adults in long-term follow up', Vaccinehttp://dx.doi.org/10.1016/j.vaccine.2019.07.005

Padmawati RS; Heywood A; Sitaresmi MN; Atthobari J; MacIntyre CR; Soenarto Y; Seale H, 2019, 'Religious and community leaders' acceptance of rotavirus vaccine introduction in Yogyakarta, Indonesia: A qualitative study', BMC Public Health, vol. 19, http://dx.doi.org/10.1186/s12889-019-6706-4

Zhang EJ; Chughtai AA; Heywood A; MacIntyre CR, 2019, 'Influence of political and medical leaders on parental perception of vaccination: A cross-sectional survey in Australia', BMJ Open, vol. 9, http://dx.doi.org/10.1136/bmjopen-2018-025866

MacIntyre, C.R., Costantino, V., Mohanty, B., Nand, D., Kunasekaran, M.P. and Heslop, D. Epidemic size, duration and vaccine stockpiling following a large-scale attack with smallpox. Global Biosecurity 2019, 1(1). doi: http://doi.org/10.31646/gbio.13

Chen X, Chughtai AA, MacIntyre CR. Recalibration of the Grunow Finke Assessment Tool to improve performance in detecting unnatural epidemics. Risk Analysis. 01 Jan 2019. doi: 10.1111/risa.13255

Dirmesropian S; Liu B; Wood JG; MacIntyre CR; McIntyre P; Karki S; Jayasinghe S; Newall AT, 2019, 'Pneumonia hospitalisation and case-fatality rates in older Australians with and without risk factors for pneumococcal disease: implications for vaccine policy', Epidemiology and infection, vol. 147, pp. e118, http://dx.doi.org/10.1017/S0950268818003473

MacIntyre CR; Costantino V; Kunasekaran MP, 2019, 'Health system capacity in Sydney, Australia in the event of a biological attack with smallpox', PLoS ONE, vol. 14, http://dx.doi.org/10.1371/journal.pone.0217704

Barnes CE; MacIntyre CR, 2019, 'Risk modelling the mortality impact of antimicrobial resistance in secondary pneumococcal pneumonia infections during the 2009 influenza pandemic', International Journal of Infectious Diseases, vol. 85, pp. 1 - 6, http://dx.doi.org/10.1016/j.ijid.2019.05.005

Sparks R; Jin B; Karimi S; Paris C; MacIntyre CR, 2019, 'Rejoinder', Quality Engineering, vol. 31, pp. 105 - 107, http://dx.doi.org/10.1080/08982112.2018.1547831

Sparks R; Jin B; Karimi S; Paris C; MacIntyre CR, 2019, 'Real-time monitoring of events applied to syndromic surveillance', Quality Engineering, vol. 31, pp. 73 - 90, http://dx.doi.org/10.1080/08982112.2018.1537443

Moa AM; Adam DC; MacIntyre CR, 2019, 'Inter-seasonality of influenza in Australia.', Influenza Other Respir Viruseshttp://dx.doi.org/10.1111/irv.12642

Joshi A; Karim S; Sparks R; Paris C; MacIntyre R, 2019, 'Survey of Text-based Epidemic Intelligence: A Computational Linguistic Perspective', ACM Computing Surveys

Jayasundara D; Hui BB; Regan DG; Heywood AE; MacIntyre CR; Wood JG, 2019, 'Modelling the decline and future of hepatitis A transmission in Australia', Journal of Viral Hepatitis, vol. 26, pp. 199 - 207, http://dx.doi.org/10.1111/jvh.13018

Armstrong J; Adam D; Kunasekaran M; MacIntyre R; Nand D; Heslop D, 2019, 'Themes and correlations of participant experience and evaluation of an interactive bioterrorism release exercise – a mixed methods study', Journal of Global Biosecurity, vol. 1

David H; MacIntyre R, 2019, 'Germ line genome editing and the emerging struggle for supremacy in the Chemical, Biological and Radiological (CBR) balance of power', Global Biosecurity, vol. 1, pp. 169 - 173, https://jglobalbiosecurity.com/articles/18/

MacIntyre R; Heslop D; Nand D; Schramm C; Butel M; Rawlinson W; Baker M; Kiedrzynski T; Nelson C; Fotualii L; Yeo K; Elsgaard J; Fonua L; Lane M, 2019, 'Exercise Mataika: White Paper on response to a smallpox bioterrorism release in the Pacific', Journal of Global Biosecurity

Hii A, Chughtai AA, Housen T, Saketa A, Kunasekaran MP, Sulaiman F, et al. Epidemic intelligence needs of stakeholders in the Asia–Pacific region. Western Pac Surveill Response J. 2018 Dec;9(4). doi:10.5365/wpsar.2018.9.2.009.

McLure, A, Furuya Kanamori, L, Clements, A et al 2019, 'Seasonality and community interventions in a mathematical model of Clostridium difficile transmission [IN PRESS]', Journal of Hospital Infection, vol. Online, pp. 1-8pp.

McLure, A, Clements, A, Kirk, M et al 2019, 'Modelling diverse sources of Clostridium difficile in the community: importance of animals, infants and asymptomatic carriers', Epidemiology and Infection, vol. 147, no. 152, pp. 1-9pp.

Toms, L, Braunig, J, Vijayasarathy, S et al 2019, 'Per- and polyfluoroalkyl substances (PFAS) in Australia: Current levels and estimated population reference values for selected compounds', International Journal of Hygiene and Environmental Health, vol. 222, no. 3, pp. 387-394.

Williamson, D, Kirk, M, Sintchenko, V et al 2019, 'The importance of public health genomics for ensuring health security for Australia', Medical Journal of Australia, vol. 210, no. 7, pp. 295-297.

Ingle, D, da Silva, A, Valcanis, M et al 2019, 'Emergence and divergence of major lineages of Shiga-toxin-producing Escherichia coli in Australia', Microbial Genomics, vol. 5.

Parisi, A, Crump, J, Stafford, R et al 2019, 'Increasing incidence of nontyphoidal Salmonella infections in Queensland, Australia, 2007-2016', PLoS Neglected Tropical Diseases, vol. 13, no. 3, pp. 15pp.

McLure, A, Clements, A, Kirk, M et al 2018, 'Modelling diverse sources of Clostridium difficile in the community: importance of animals, infants and asymptomatic carriers [IN PRESS]', Epidemiology and Infection.

Sheel, M, Beard, F, Quinn, H et al 2018, 'Australian vaccine preventable disease epidemiological review series: varicella-zoster virus infections, 1998-2015', Communicable Diseases Intelligence, vol. 42, no. 18.

White, A, Ciampa, N, Chen, Y et al 2018, 'Characteristics of Campylobacter, Salmonella Infections and Acute Gastroenteritis in Older Adults in Australia, Canada, and the United States [IN PRESS]', Clinical Infectious Diseases.

Sheel, M, Collins, J, Kama, M et al 2018, 'Evaluation of the early warning, alert and response system after Cyclone Winston, Fiji, 2016 ', Bulletin of the World Health Organization, vol. 97, no. 3, pp. 169-244.

Clarke, N. E., S. A. R. Doi, K. Wangdi, Y. Chen, A. C. A. Clements, and S. V. Nery. 2019. "Efficacy of anthelminthic drugs and drug combinations against soil-transmitted helminths: A systematic review and network meta-analysis." Clinical Infectious Diseases 68 (1): 96-105.

Gordon, C. A., J. Kurscheid, G. M. Williams, A. C. A. Clements, Y. Li, X. N. Zhou, J. Utzinger, D. P. McManus, and D. J. Gray. 2019. "Asian Schistosomiasis: Current Status and Prospects for Control Leading to Elimination." Trop Med Infect Dis 4 (1)

Yew YY; Castro Delgado R; Heslop DJ; Arcos González P, 2019, 'The yew disaster severity index: A new tool in disaster metrics', Prehospital and Disaster Medicine, vol. 34, pp. 98 - 103, http://dx.doi.org/10.1017/S1049023X18001115

Harrison R; Manias E; Mears S; Heslop D; Hinchcliff R; Hay L, 2019, 'Addressing unwarranted clinical variation: A rapid review of current evidence', Journal of Evaluation in Clinical Practice, vol. 25, pp. 53 - 65, http://dx.doi.org/10.1111/jep.12930

Kim KW; Allen DW; Briese T; Couper JJ; Barry SC; Colman PG; Cotterill AM; Davis EA; Giles LC; Harrison LC; Harris M; Haynes A; Horton JL; Isaacs SR; Jain K; Lipkin WI; Morahan G; Morbey C; Pang IC N; Papenfuss AT; Penno MA S; Sinnott RO; Soldatos G; Thomson RL; Vuillermin PJ; Wentworth JM; Wilkins MR; Rawlinson WD; Craig ME, 2019, 'Distinct gut virome profile of pregnant women with type 1 diabetes in the ENDIA study', Open Forum Infectious Diseases, vol. 6, http://dx.doi.org/10.1093/ofid/ofz025

Walker GJ; Stelzer-Braid S; Shorter C; Honeywill C; Wynn M; Willenborg C; Barnes P; Kang J; Pierse N; Crane J; Howden-Chapman P; Rawlinson WD, 2019, 'Viruses associated with acute respiratory infection in a community-based cohort of healthy New Zealand children.', J Med Virolhttp://dx.doi.org/10.1002/jmv.25493

Karelehto E; Brouwer L; Benschop K; Kok J; Basile K; McMullan B; Rawlinson W; Druce J; Nicholson S; Selvarangan R; Harrison C; Lankachandra K; van Eijk H; Koen G; de Jong M; Pajkrt D; Wolthers KC, 2019, 'Seroepidemiology of parechovirus A3 neutralizing antibodies, Australia, The Netherlands, and United States', Emerging Infectious Diseases, vol. 25, pp. 148 - 152, http://dx.doi.org/10.3201/eid2501.180352

Zheng QY; Huynh KT; van Zuylen WJ; Craig ME; Rawlinson WD, 2019, 'Cytomegalovirus infection in day care centres: A systematic review and meta-analysis of prevalence of infection in children', Reviews in Medical Virology, vol. 29, http://dx.doi.org/10.1002/rmv.2011

Macdonald-Laurs E; Koirala A; Britton PN; Rawlinson W; Hiew CC; Mcrae J; Dale RC; Jones C; Macartney K; McMullan B; Pillai S, 2019, 'CSF neopterin, a useful biomarker in children presenting with influenza associated encephalopathy?', European Journal of Paediatric Neurology, vol. 23, pp. 204 - 213, http://dx.doi.org/10.1016/j.ejpn.2018.09.009

Ammar, S. E., McIntyre, M. I., Swan, T., Kasper, J., Derraik, J. G. B., Baker, M. G., & Hales, S. (2019). Intercepted mosquitoes at New Zealand's ports of entry, 2001 to 2018: Current status and future concerns. Tropical Medicine & Infectious Disease4(3), 101. doi: 10.3390/tropicalmed4030101

Prasad, N., Huang, S., Wood, T., Aminisani, N., McArthur, C., Baker, M. G., … Newbern, C. (2019). Influenza associated outcomes among pregnant, post-partum, and non-pregnant women of reproductive age. Journal of Infectious Diseases219(12), 1893-1903. doi: 10.1093/infdis/jiz035